Publications

pysigscore: gene signatures scoring across bulk and single-cell transcriptomics

Published in bioRxiv (under review), 2026

A Python framework for gene set scoring in bulk and single-cell RNA-seq, bringing together 18 scoring methods behind one interface, with built-in reliability analysis.

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Enrichment Algorithms for Gene Regulatory Network Reconstruction

Published in CIBB 2025 — 20th International Conference on Computational Intelligence Methods for Bioinformatics and Biostatistics, Politecnico di Milano, 2025

Extending the CellOracle framework with enrichment-based methods to make inferred gene regulatory networks more biologically interpretable.